I am doing a quick write up of how to connect all modules together. Chris, please edit this post.
Here is a close-up of the Raspberry PI connector P1, the board main connector that we will use to link it to our modules using the I2C bus.

The P1 connector is the 26 pins located on the top right, here is a pin out of the header along with description

I suggest we stick to these colours
5v power supply - red
0v, GND - yellow
I2C SDA - blue
I2C SCL - green
The 1 wire bus, on GPIO 1 at the moment, yet to come up with a colour.
The main diagram shows how to connect the modules we have so far along with the led drivers, led power supply and temperature sensor.

A close up of the RTC (Real Time Clock) module and how to wire it

We keep the same colours whenever we encounter a known signal line (Vcc, GND, SCA, SDL).
The PCA9685 module and the associated connections

I have also added a 2 channels relays module, this will vary widely depending on each setup

We'll need to connect them together, a step by step visual guide. All connections are made via a small piece of breadboard.
First we connect the Raspberry Pi signals to the breadboard, 5v VCC, GND, and the SCL and SDA I2C bus lines

Then connect the wires to the RTC module. To make it easier I use the colours we defined earlier

Getting it wired to the breadboard

PCA9685 close up with the wiring, we are not using the board's blue V+ middle connector for now

Add the wires and connect it to the breadboard

Most users will probably use more than 2 channels relays module, wiring this one for this presentation

Finally, all modules connected together

Please review and add your comments.